Package: RFlocalfdr 0.8.5

RFlocalfdr: Significance Level for Random Forest Impurity Importance Scores

Sets a significance level for Random Forest MDI (Mean Decrease in Impurity, Gini or sum of squares) variable importance scores, using an empirical Bayes approach. See Dunne et al. (2022) <doi:10.1101/2022.04.06.487300>.

Authors:Robert Dunne [aut, cre]

RFlocalfdr_0.8.5.tar.gz
RFlocalfdr_0.8.5.zip(r-4.5)RFlocalfdr_0.8.5.zip(r-4.4)RFlocalfdr_0.8.5.zip(r-4.3)
RFlocalfdr_0.8.5.tgz(r-4.4-any)RFlocalfdr_0.8.5.tgz(r-4.3-any)
RFlocalfdr_0.8.5.tar.gz(r-4.5-noble)RFlocalfdr_0.8.5.tar.gz(r-4.4-noble)
RFlocalfdr_0.8.5.tgz(r-4.4-emscripten)RFlocalfdr_0.8.5.tgz(r-4.3-emscripten)
RFlocalfdr.pdf |RFlocalfdr.html
RFlocalfdr/json (API)

# Install 'RFlocalfdr' in R:
install.packages('RFlocalfdr', repos = c('https://parsifal9.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

3.11 score 13 scripts 148 downloads 18 exports 19 dependencies

Last updated 1 years agofrom:c4847f6b2d. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 08 2024
R-4.5-winNOTENov 08 2024
R-4.5-linuxNOTENov 08 2024
R-4.4-winNOTENov 08 2024
R-4.4-macNOTENov 08 2024
R-4.3-winNOTENov 08 2024
R-4.3-macNOTENov 08 2024

Exports:count_variablesdetermine_cutoffdetermine.Cdsnf.fitfit.to.data.setfit.to.data.set.wrapperlocal.fdrmy_PIMPmy_ranger_PIMPmy.dsnmy.test1funplotQpropTrueNullByLocalFDRpsnqsnrun.it.importancessignificant.genes

Dependencies:fitdistrpluslatticeMASSMatrixMatrixModelsminpack.lmmnormtnumDerivquantregrandomForestrangerRcppRcppEigenRFlocalfdr.datarlangsnSparseMsurvivalvita

RFlocalfdr Simulated Data Example

Rendered fromsimulated.Rmdusingknitr::rmarkdownon Nov 08 2024.

Last update: 2023-11-09
Started: 2023-11-09

Smoking data

Rendered fromSmoking.Rmdusingknitr::rmarkdownon Nov 08 2024.

Last update: 2023-11-09
Started: 2023-11-09